AM Mix (Agilent Bravo)
Description
The AM Mix (Agilent Bravo) (
) task is designed for aspirating and dispensing fluids through AssayMAP Bravo cartridges that are mounted on the Bravo 96AM Head.
) task is designed for aspirating and dispensing fluids through AssayMAP Bravo cartridges that are mounted on the Bravo 96AM Head.Task is available for... | Task is available in... |
|---|---|
Bravo Platform with Bravo 96AM Head | Main Protocol, Bravo Subprocess |
The AM Mix (Bravo) task has the same task parameters as the Mix (Bravo) task, plus an additional parameter that enables you to override the flow rate in the liquid class, if specified. Precise flow-rate control is critical for the performance of the AssayMAP Bravo cartridges. The option to override the aspirate and dispense flow rate (velocity) in the liquid class enables an operator to change the flow rate from experiment to experiment for rapid method development without modifying the liquid class. Likewise, the flow rate can vary for different AM Mix tasks that use the same liquid class in a given protocol.
Figure Liquid class velocity setting in the Liquid Library Editor and flow rate override option
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Task parameters
After adding the AM Mix task at the desired point in the protocol, set the following parameters in the Task Parameters area:
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Parameter | Description |
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Location, plate | The labware involved in the Mix task. |
Location, location | The location at which the Mix task occurs. <auto-select> automatically places the labware at the first-available or appropriate location for the task. If accessories are installed on the deck or shelf, the software uses the accessory configuration information in Bravo Diagnostics or Vertical Pipetting Station Diagnostics to determine the correct location for the task. |
Volume (0–250 µL) | The volume of liquid to be mixed in each well. |
Pre-aspirate volume (0–250 µL) | The volume of air to be drawn before the pipette tips enter the liquid. |
Blowout volume (0–250 µL) | The volume of air to dispense after the main volume has been dispensed while the tips are still in the wells. Typically, the blowout volume is the same as the pre-aspirate volume. |
Liquid class | The pipetting velocity and accuracy.  To ensure consistent pipetting, always select a liquid class for liquid-handling tasks. |
Override flow rates from liquid class | The option to override the aspirate and dispense velocity in the selected liquid class. Selecting this option enables you to specify a value for the flow rate without changing the liquid class. |
Aspirate/dispense flow rate (1e-05–500 µL/s) | The numerical value or the JavaScript variable that will override both the aspirate and dispense velocity in the selected liquid class. A JavaScript variable enables the value to be assigned later. For example, using a VWorks form, an operator could easily change the flow rate for a mix step in increments from as low as 1 µL/min up to 2000 µL/min or more using the same liquid class. If the task is included in a VWorks macro, a JavaScript variable enables you to change the value for the task at the macro level. The software requires that the flow rate value be in microliters per second (µL/s) at run time. If you want an operator to enter the value in microliters per minute (µL/min), you can use scripting to convert the values for the software to use. |
Mix cycles (0–100) | The number of times to repeat the aspirate-and-dispense cycle. |
Dynamic tip extension (0–20 mm/µL) | The rate at which the Bravo 96AM Head moves during the aspirate action. The software calculates the distance over which the tips will move without crashing. Use dynamic tip extension to prevent spills as the pipette tips displace the liquid. To move the tips: • At the same rate as the volume change. Calculate dynamic tip extension (DTE) as follows: DTE = (well depth)/(well vol) = 1/A, where A is the cross-sectional area of a well with straight walls • Faster than the volume change. DTE > 1/A • Slower than the volume change. DTE < 1/A The starting and ending positions can be calculated as follows: (Vaspirated * DTE) + Distancewell bottom Note: Instead of a negative aspirated volume, the software automatically moves downward toward the well bottom with each aspirate action. |
Well selection | The wells at which the Mix task occurs. Click in the parameter box, and then click the Browse button to select the wells in the Well Selection dialog box. Use this parameter only if the Bravo 96AM Head has fewer tips than the number of wells in the microplate, or if you are in single-row or single-column mode. |
Pipette technique | The pipette location offset you want to use for the Mix task. The list of pipette techniques are defined in the Pipette Technique Editor. |
Aspirate distance (0–100 mm) | The distance between the end of the pipette tips and the well botttoms during the aspirate action. The labware definition must be accurate and the teachpoint must be precise in order for the system to position the tips at the correct distance from the well bottom. |
Dispense at different distance | The option to dispense at a pipette tip height that is different than the aspirate distance. Select the check box to enter a value for the dispense distance. |
Dispense distance (0–100 mm) | The distance between the tips of the probes, cartridges, or disposable tips and the well bottoms during the dispense action. |
Perform tip touch | The option to touch the tips on one or more sides of the well. |
Which sides to use for tip touch | The side or sides of the well to use during tip touch: North, South, East, West, North/South, West/East, West/East/South/North. |
Tip touch retract distance (–20 to 50 mm) | The vertical distance for the tips to rise before touching the sides of the wells. |
Tip touch horizontal offset (–5 to 5 mm) | The horizontal distance the tips move. The value is based on the well diameter specified by the labware definition. For example, if you set a value of: • 0, the tips move a horizontal distance equal to the well radius • > 0, the tips attempt to move past the well radius, which results in a more forceful tip touch • < 0, the tips move a distance less than the radius of the well, resulting in a lighter tip touch |
Quadrant pattern well selection
A quadrant is an evenly spaced array of locations that are accessible by the tips on a pipette head.
Note: For the Bravo 96AM Head, the quadrant pattern option is available only if you are using 384-well microplates.
Instead of a column- or row-wise pattern, you can select a quadrant pattern during well selection.
The quadrant pattern option is available only if:
• The number of channels in the pipette head (or pins in a pin tool) is fewer than the number of wells in the microplate. For example, you can use a 96-channel pipette head to dispense liquid into a 384-well microplate or 1536-well microplate.
• All the channels are selected in the Set Head Mode task when using a pipette head. (The Set Head Mode task is not an option when using a pin tool).
• The liquid-handling task is inside a loop.
If you select a quadrant pattern, specifications in the Well Selection dialog box will override task.Wellselection values assigned in the Advanced Settings area.To select a quadrant pattern:
1 In the Task Parameters area, click the Well selection parameter box, and then click the Browse button. The Well Selection dialog box opens. By default, the Normal well selection option is selected. This option is used for column- and row-wise liquid-handling patterns.
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2 Select Quadrant pattern in a loop. The contents of the dialog box change. Notice the following:
• Red numbers (1 through 4) appear on wells A1, A2, B1, and B2. The numbers indicate the pipetting sequence: 1 is the starting well, and 4 is the last well. In the following example, the sequence is A1, A2, B1, B2.
• Green wells indicate the starting well in the pipetting sequence.
• Pattern buttons at the bottom of the dialog box indicate the movement of the pipette channels. The movement description is provided in the text box above the buttons.
Note: The last two patterns are unavailable if a group contains 16 wells. For example, the last two patterns are not available if you have a 96-well pipette head and a 1536-well microplate.
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3 Select the starting well. The well becomes green and is labeled 1.
In the following example, the third quadrant (B1 well) is selected.
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4 Click a pattern button to specify the pipette channel movement. After you click a pattern, the red numbers in the graphic are updated to show the sequence.
In the following example, the second pattern is selected (right-to-left, then top-to-bottom). The third quadrant (B1) is the starting well. The resulting movement is:
Quadrant 3 (B1)
Quadrant 2 (A2)
Quadrant 1 (A1)
Quadrant 4 (B2)
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5 When you are finished, click OK to save the changes and return to the VWorks window.
Example: Allowing an operator to change the mix flow rate using an edit control on a VWorks form
Goal
Allow an operator to change the mix flow rate from run to run without modifying the liquid class.
Implementation
In the protocol, the AM Mix task is added. In the task parameters, the Override dispense flow rates from liquid class check box is selected, and the Aspirate/dispense flow rate is specified as a variable, for example =mixFlowRate.
In the VWorks form, an edit control is added for the mix flow rate using the =mixFlowRate variable. The operator can enter values within a specified range in the form and run the protocol using the form. For details on how to design VWorks forms to run protocols, see Creating forms for protocol operators.
Related information
For information about... | See... |
|---|---|
Using the Bravo 96AM Head | AssayMAP Bravo Platform Getting Started Guide |
AM Aspirate task | |
AM Dispense task | |
Aspirate task | |
Dispense task | |
AM Cartridges On | |
AM Cartridges Off | |
Task macros | |
Protocol forms | |
Using JavaScript variables |